Variant report

Variant	rs60555372
Chromosome Location	chr7:138286600-138286601
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11981542	0.85[EUR][1000 genomes]
rs11981647	1.00[EUR][1000 genomes]
rs1833494	1.00[AMR][1000 genomes]
rs59552958	0.92[EUR][1000 genomes]
rs60367633	0.92[EUR][1000 genomes]
rs7801298	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138273600-138286800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138284200-138293000	Weak transcription	Fetal Kidney	kidney
3	chr7:138285000-138292800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:138286200-138286800	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:138286200-138289200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:138286200-138290000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:138286600-138288600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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