Variant report

Variant	rs60572069
Chromosome Location	chr9:15739684-15739685
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11999303	1.00[EUR][1000 genomes]
rs12005062	1.00[EUR][1000 genomes]
rs12005485	1.00[EUR][1000 genomes]
rs12005521	1.00[EUR][1000 genomes]
rs12685963	1.00[EUR][1000 genomes]
rs1396705	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933504	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16933544	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16933593	0.87[AFR][1000 genomes]
rs16933603	0.87[AFR][1000 genomes]
rs16933626	0.87[AFR][1000 genomes]
rs2066291	0.82[AFR][1000 genomes]
rs34816651	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59761231	0.84[ASN][1000 genomes]
rs6474950	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6474968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7021778	0.84[AFR][1000 genomes]
rs7022810	0.87[ASN][1000 genomes]
rs7025415	0.85[AFR][1000 genomes]
rs7026090	1.00[EUR][1000 genomes]
rs7026629	0.85[AFR][1000 genomes]
rs7029410	1.00[EUR][1000 genomes]
rs7032595	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7035048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7040071	1.00[EUR][1000 genomes]
rs7040549	1.00[EUR][1000 genomes]
rs7040580	1.00[EUR][1000 genomes]
rs7048479	0.86[AFR][1000 genomes]
rs73410286	0.84[AFR][1000 genomes]
rs73416209	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416213	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73416233	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73416254	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73416261	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73416267	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73416285	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73418137	0.87[AFR][1000 genomes]
rs7847946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7854094	0.91[ASN][1000 genomes]
rs7856304	0.85[AFR][1000 genomes]
rs7860283	0.84[AFR][1000 genomes]
rs7861533	1.00[EUR][1000 genomes]
rs7865705	0.87[AFR][1000 genomes]
rs7866699	1.00[EUR][1000 genomes]
rs7867018	1.00[EUR][1000 genomes]
rs7867521	0.84[AFR][1000 genomes]
rs7869609	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7870166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7870244	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7873842	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7875957	0.81[ASN][1000 genomes]
rs906798	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15679800-15746800	Weak transcription	Ovary	ovary
2	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
3	chr9:15715200-15746200	Weak transcription	Left Ventricle	heart
4	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:15718600-15746600	Weak transcription	Thymus	Thymus
6	chr9:15729000-15746800	Weak transcription	Fetal Thymus	thymus
7	chr9:15736000-15740000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:15737000-15754000	Weak transcription	Gastric	stomach
9	chr9:15737200-15740200	Enhancers	Osteobl	bone
10	chr9:15738200-15746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:15738800-15739800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:15739200-15739800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:15739200-15746800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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