Variant report

Variant	rs60574560
Chromosome Location	chr1:194039873-194039874
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1487527	1.00[AMR][1000 genomes]
rs16836190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836491	1.00[AMR][1000 genomes]
rs16836545	1.00[AMR][1000 genomes]
rs60277362	1.00[AMR][1000 genomes]
rs60860075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052905	1.00[AMR][1000 genomes]
rs73052916	1.00[AMR][1000 genomes]
rs73052919	1.00[AMR][1000 genomes]
rs73052931	1.00[AMR][1000 genomes]
rs73052935	1.00[AMR][1000 genomes]
rs73052944	1.00[AMR][1000 genomes]
rs73064707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070728	1.00[AMR][1000 genomes]
rs73070733	1.00[AMR][1000 genomes]
rs73070741	1.00[AMR][1000 genomes]
rs73070750	1.00[AMR][1000 genomes]
rs73070753	1.00[AMR][1000 genomes]
rs73070757	1.00[AMR][1000 genomes]
rs73070766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001872	chr1:194030479-194288016	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv872836	chr1:194032486-194130204	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194032200-194043000	Weak transcription	Right Atrium	heart
2	chr1:194033800-194040400	Weak transcription	HUVEC	blood vessel
3	chr1:194037800-194042400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:194038000-194040800	Enhancers	Fetal Brain Male	brain
5	chr1:194038600-194042000	Enhancers	Brain Germinal Matrix	brain
6	chr1:194039200-194040200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:194039400-194042800	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:194039400-194045200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:194039600-194043000	Weak transcription	Fetal Heart	heart
10	chr1:194039800-194040600	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links