Variant report

Variant	rs60582355
Chromosome Location	chr11:47560107-47560108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47559176..47561794-chr11:47565770..47569453,3	MCF-7	breast:
2	chr11:47556312..47559007-chr11:47559496..47562082,2	MCF-7	breast:
3	chr11:47557985..47562133-chr11:47565496..47569267,5	K562	blood:
4	chr11:47553494..47556204-chr11:47558570..47560706,2	MCF-7	breast:
5	chr11:47559425..47562180-chr11:47787809..47790280,2	MCF-7	breast:
6	chr11:47556325..47561893-chr11:47562676..47568878,7	K562	blood:
7	chr11:47546300..47548037-chr11:47559211..47561891,2	K562	blood:

Variant related genes	Relation type
ENSG00000149187	Chromatin interaction
ENSG00000109920	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11039291	1.00[ASN][1000 genomes]
rs34580776	1.00[EUR][1000 genomes]
rs56904157	1.00[EUR][1000 genomes]
rs56962998	1.00[EUR][1000 genomes]
rs57175250	1.00[EUR][1000 genomes]
rs57830455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57878668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58841898	1.00[EUR][1000 genomes]
rs59409510	1.00[EUR][1000 genomes]
rs61654484	1.00[EUR][1000 genomes]
rs7109710	1.00[ASN][1000 genomes]
rs73451032	1.00[EUR][1000 genomes]
rs73451054	1.00[EUR][1000 genomes]
rs73453709	1.00[EUR][1000 genomes]
rs73453756	1.00[EUR][1000 genomes]
rs73459751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73459795	1.00[AMR][1000 genomes]
rs73459799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461779	1.00[EUR][1000 genomes]
rs73461796	1.00[EUR][1000 genomes]
rs73461797	1.00[EUR][1000 genomes]
rs73463785	1.00[EUR][1000 genomes]
rs73465695	1.00[EUR][1000 genomes]
rs73465700	1.00[EUR][1000 genomes]
rs73467344	1.00[EUR][1000 genomes]
rs73467345	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47546000-47572400	Weak transcription	Fetal Intestine Large	intestine
2	chr11:47546200-47560400	Weak transcription	Esophagus	oesophagus
3	chr11:47546400-47560400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:47546400-47560800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:47546400-47561200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:47546400-47564200	Weak transcription	Thymus	Thymus
7	chr11:47546400-47573400	Weak transcription	Colonic Mucosa	Colon
8	chr11:47546400-47573600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:47546600-47561000	Weak transcription	Stomach Mucosa	stomach
10	chr11:47546800-47560200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:47547400-47560400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:47547400-47560800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:47547800-47562000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:47548200-47560400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:47550600-47561000	Weak transcription	Placenta	Placenta
16	chr11:47551000-47563200	Enhancers	Fetal Brain Male	brain
17	chr11:47552200-47560400	Weak transcription	HMEC	breast
18	chr11:47552600-47560800	Weak transcription	Pancreas	Pancrea
19	chr11:47553000-47573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:47554200-47561400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:47554400-47560200	Weak transcription	Brain Angular Gyrus	brain
22	chr11:47554400-47560400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:47554400-47561200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:47554400-47561600	Weak transcription	Fetal Kidney	kidney
25	chr11:47554400-47572400	Weak transcription	Aorta	Aorta
26	chr11:47554600-47560400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:47554600-47560400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:47554600-47560400	Weak transcription	NHDF-Ad	bronchial
29	chr11:47554600-47561200	Weak transcription	HepG2	liver
30	chr11:47554800-47571600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:47554800-47572400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:47555000-47560200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:47555000-47560400	Weak transcription	Gastric	stomach
34	chr11:47555000-47560800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:47555200-47560400	Weak transcription	NH-A	brain
36	chr11:47555200-47561000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr11:47555400-47560400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:47555400-47560400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:47555400-47560400	Weak transcription	Brain Anterior Caudate	brain
40	chr11:47555400-47560400	Weak transcription	HSMMtube	muscle
41	chr11:47555400-47560800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:47555400-47561200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:47555600-47560200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:47555800-47560800	Weak transcription	Right Ventricle	heart
45	chr11:47556000-47560400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:47556200-47560400	Weak transcription	Ovary	ovary
47	chr11:47556400-47561200	Weak transcription	Primary B cells from cord blood	blood
48	chr11:47556600-47560400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr11:47556600-47560400	Weak transcription	NHLF	lung
50	chr11:47556800-47561400	Weak transcription	Monocytes-CD14+_RO01746	blood

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