Variant report

Variant	rs60612289
Chromosome Location	chr5:59571718-59571719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10939844	0.86[ASN][1000 genomes]
rs6893928	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7711108	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59561600-59576600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:59567400-59581600	Weak transcription	Fetal Brain Male	brain
4	chr5:59568400-59574800	Weak transcription	Aorta	Aorta
5	chr5:59569600-59573200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:59570000-59572000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:59570000-59573000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:59570600-59572200	Enhancers	A549	lung
9	chr5:59570600-59572400	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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