Variant report

Variant	rs60626181
Chromosome Location	chr10:50857349-50857350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10399986	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10400026	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400027	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400043	0.83[AMR][1000 genomes]
rs10400097	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400098	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400121	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10400152	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400162	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400182	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59551969	1.00[AMR][1000 genomes]
rs60959867	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61115650	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61132699	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1037405	chr10:50800817-50940545	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50847000-50860600	Weak transcription	Right Atrium	heart
2	chr10:50854800-50857400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:50854800-50859000	Enhancers	Fetal Thymus	thymus
4	chr10:50856200-50858200	Enhancers	Primary T cells from cord blood	blood
5	chr10:50856200-50858600	Enhancers	Thymus	Thymus
6	chr10:50856400-50858800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:50856400-50858800	Flanking Active TSS	Dnd41	blood
8	chr10:50856600-50859600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:50857000-50857400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
10	chr10:50857000-50857400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:50857000-50857600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:50857000-50857800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr10:50857000-50858200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr10:50857000-50858400	Weak transcription	Placenta	Placenta
15	chr10:50857000-50860000	Weak transcription	Spleen	Spleen
16	chr10:50857200-50857400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr10:50857200-50857600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr10:50857200-50857800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr10:50857200-50857800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:50857200-50858200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr10:50857200-50858200	Enhancers	Primary B cells from peripheral blood	blood
22	chr10:50857200-50858600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links