Variant report

Variant	rs60683973
Chromosome Location	chr6:12040295-12040296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12038244..12040741-chr6:12042062..12045321,3	K562	blood:
2	chr6:12037254..12038988-chr6:12039083..12040698,2	K562	blood:
3	chr6:12038480..12040741-chr6:12042062..12044805,2	K562	blood:
4	chr6:12039791..12041482-chr6:12063488..12065210,2	MCF-7	breast:

rs_ID	r²[population]
rs12189667	1.00[EUR][1000 genomes]
rs12190182	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12190917	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes]
rs12198183	1.00[EUR][1000 genomes]
rs12199764	0.97[ASN][1000 genomes]
rs12202320	1.00[EUR][1000 genomes]
rs12202388	1.00[EUR][1000 genomes]
rs12202981	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12204035	1.00[EUR][1000 genomes]
rs12205721	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12208282	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12210876	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12212747	1.00[EUR][1000 genomes]
rs12213062	1.00[EUR][1000 genomes]
rs12216165	1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes]
rs57671359	0.97[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes]
rs60027663	1.00[EUR][1000 genomes]
rs60765903	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6939106	0.82[ASN][1000 genomes]

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
3	chr6:12023200-12047800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:12026000-12044800	Weak transcription	NHDF-Ad	bronchial
5	chr6:12029200-12045000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:12029800-12042800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:12032000-12044800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:12032000-12044800	Weak transcription	NH-A	brain
9	chr6:12032000-12047600	Weak transcription	Fetal Stomach	stomach
10	chr6:12034400-12045000	Weak transcription	HUVEC	blood vessel
11	chr6:12034600-12044800	Weak transcription	Hela-S3	cervix
12	chr6:12034600-12045000	Weak transcription	A549	lung
13	chr6:12034800-12047600	Weak transcription	Fetal Intestine Large	intestine
14	chr6:12034800-12061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:12035000-12049800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:12035200-12041000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:12035200-12041800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:12035200-12044600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:12035200-12044800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:12035200-12044800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:12035200-12047800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:12035200-12052200	Weak transcription	Stomach Mucosa	stomach
23	chr6:12035400-12044000	Weak transcription	Liver	Liver
24	chr6:12035400-12044800	Weak transcription	Aorta	Aorta
25	chr6:12035400-12044800	Weak transcription	HSMMtube	muscle
26	chr6:12035400-12045000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:12035600-12044800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:12036600-12040400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr6:12036800-12040800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:12037200-12040400	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:12038000-12047600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:12038200-12044800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:12038200-12044800	Weak transcription	Brain Angular Gyrus	brain
34	chr6:12038200-12045000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:12038200-12045000	Weak transcription	Ovary	ovary
36	chr6:12038200-12045000	Weak transcription	Small Intestine	intestine
37	chr6:12038400-12043800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:12038400-12044800	Weak transcription	Primary B cells from cord blood	blood
39	chr6:12038400-12044800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:12038400-12045000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:12038600-12044600	Weak transcription	NHEK	skin
42	chr6:12038600-12044800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:12039000-12040400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr6:12039200-12040400	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr6:12039200-12040400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:12039200-12044600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:12039400-12040800	Strong transcription	HSMM	muscle
48	chr6:12039600-12040400	Enhancers	H1 Cell Line	embryonic stem cell
49	chr6:12039600-12040400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:12039600-12040400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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