Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1415946	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1475916	1.00[JPT][hapmap]
rs189739	0.85[EUR][1000 genomes]
rs2350100	0.82[CEU][hapmap]
rs2518226	1.00[JPT][hapmap]
rs2518228	1.00[JPT][hapmap]
rs2518231	1.00[JPT][hapmap]
rs2518234	1.00[JPT][hapmap]
rs2518235	1.00[JPT][hapmap]
rs2518238	1.00[JPT][hapmap]
rs2518249	1.00[JPT][hapmap]
rs2579933	1.00[JPT][hapmap]
rs2579934	1.00[JPT][hapmap]
rs2629989	0.81[EUR][1000 genomes]
rs2788276	1.00[JPT][hapmap]
rs283182	0.85[EUR][1000 genomes]
rs283188	0.85[EUR][1000 genomes]
rs283211	0.85[EUR][1000 genomes]
rs283227	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs283228	0.85[EUR][1000 genomes]
rs283229	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852508	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2852532	1.00[JPT][hapmap]
rs3811080	1.00[JPT][hapmap]
rs386552	0.85[EUR][1000 genomes]
rs439291	0.85[EUR][1000 genomes]
rs480221	0.89[AFR][1000 genomes]
rs485947	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs516735	0.81[EUR][1000 genomes]
rs517552	0.81[EUR][1000 genomes]
rs550690	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs577503	0.89[AFR][1000 genomes]
rs597750	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs649828	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs683830	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs705629	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101750800-101751800	ZNF genes & repeats	Dnd41	blood
2	chr6:101751000-101751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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