Variant report

Variant	rs60702386
Chromosome Location	chr6:150721765-150721766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150720777..150722938-chr6:150732800..150734541,2	MCF-7	breast:
2	chr6:150717285..150719589-chr6:150720584..150722449,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11962096	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11969964	0.85[EUR][1000 genomes]
rs12208588	0.82[ASN][1000 genomes]
rs12530375	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1339104	0.85[EUR][1000 genomes]
rs1339105	0.85[EUR][1000 genomes]
rs1339106	0.85[EUR][1000 genomes]
rs1339107	0.85[EUR][1000 genomes]
rs1416481	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1556881	0.91[EUR][1000 genomes]
rs2064213	0.85[EUR][1000 genomes]
rs2076285	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076286	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076287	0.91[EUR][1000 genomes]
rs2076288	0.91[EUR][1000 genomes]
rs2076289	0.91[EUR][1000 genomes]
rs2076290	0.91[EUR][1000 genomes]
rs2076291	0.91[EUR][1000 genomes]
rs2076292	0.91[EUR][1000 genomes]
rs3734734	0.91[EUR][1000 genomes]
rs3823259	0.94[EUR][1000 genomes]
rs3823260	0.94[EUR][1000 genomes]
rs4407723	0.91[EUR][1000 genomes]
rs57538858	0.82[EUR][1000 genomes]
rs62432478	0.82[EUR][1000 genomes]
rs62432482	0.85[EUR][1000 genomes]
rs62432483	0.85[EUR][1000 genomes]
rs62432484	0.85[EUR][1000 genomes]
rs62432506	0.91[EUR][1000 genomes]
rs62432511	0.91[EUR][1000 genomes]
rs62432540	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62432541	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62432542	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6909655	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6921360	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73617698	0.94[EUR][1000 genomes]
rs7745569	0.91[EUR][1000 genomes]
rs7761373	0.85[EUR][1000 genomes]
rs7761906	0.91[EUR][1000 genomes]
rs7762616	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7770389	0.85[EUR][1000 genomes]
rs7774077	0.97[EUR][1000 genomes]
rs9322259	0.91[EUR][1000 genomes]
rs9371429	0.85[EUR][1000 genomes]
rs9371437	0.85[EUR][1000 genomes]
rs9372012	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383808	0.91[EUR][1000 genomes]
rs9384472	0.91[EUR][1000 genomes]
rs9384473	0.91[EUR][1000 genomes]
rs9384476	0.88[EUR][1000 genomes]
rs9397292	0.82[EUR][1000 genomes]
rs9397302	0.91[EUR][1000 genomes]
rs9397303	0.91[EUR][1000 genomes]
rs9397944	0.91[EUR][1000 genomes]
rs9397954	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464078	chr6:150720439-150729878	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv604849	chr6:150720439-150729878	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150718200-150721800	Strong transcription	Liver	Liver
2	chr6:150719600-150723800	Weak transcription	Fetal Heart	heart
3	chr6:150720600-150723000	Weak transcription	Fetal Intestine Small	intestine

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