Variant report

Variant	rs60711291
Chromosome Location	chr7:104665041-104665042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104664494..104666529-chr7:104689516..104692516,3	K562	blood:
2	chr7:104663218..104665844-chr7:104995701..104998605,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs56007018	1.00[AMR][1000 genomes]
rs56397729	1.00[AMR][1000 genomes]
rs57369490	1.00[AMR][1000 genomes]
rs57437921	1.00[AMR][1000 genomes]
rs57834400	1.00[AMR][1000 genomes]
rs58052615	1.00[AMR][1000 genomes]
rs58436549	1.00[AMR][1000 genomes]
rs58652912	1.00[AMR][1000 genomes]
rs58727441	1.00[AMR][1000 genomes]
rs59672048	1.00[AMR][1000 genomes]
rs59965211	1.00[AMR][1000 genomes]
rs60336509	1.00[AMR][1000 genomes]
rs60649764	1.00[AMR][1000 genomes]
rs60977282	1.00[AMR][1000 genomes]
rs61258714	1.00[AMR][1000 genomes]
rs73404009	1.00[AMR][1000 genomes]
rs73404010	1.00[AMR][1000 genomes]
rs73404019	1.00[AMR][1000 genomes]
rs73404022	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404030	1.00[AMR][1000 genomes]
rs73404039	1.00[AMR][1000 genomes]
rs73404052	1.00[AMR][1000 genomes]
rs73404060	1.00[AMR][1000 genomes]
rs73404066	1.00[AMR][1000 genomes]
rs73404071	1.00[AMR][1000 genomes]
rs73404094	1.00[AMR][1000 genomes]
rs73417640	1.00[AMR][1000 genomes]
rs73417643	1.00[AMR][1000 genomes]
rs73417647	1.00[AMR][1000 genomes]
rs73417652	1.00[AMR][1000 genomes]
rs73417661	1.00[AMR][1000 genomes]
rs73417662	1.00[AMR][1000 genomes]
rs73417667	1.00[AMR][1000 genomes]
rs73417669	1.00[AMR][1000 genomes]
rs73417674	1.00[AMR][1000 genomes]
rs73419733	1.00[AMR][1000 genomes]
rs73419738	1.00[AMR][1000 genomes]
rs73419746	1.00[AMR][1000 genomes]
rs73419748	1.00[AMR][1000 genomes]
rs73419776	1.00[AMR][1000 genomes]
rs73419784	1.00[AMR][1000 genomes]
rs73419799	1.00[AMR][1000 genomes]
rs73419801	1.00[AMR][1000 genomes]
rs73421715	1.00[AMR][1000 genomes]
rs73421732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73421755	1.00[AMR][1000 genomes]
rs73421758	1.00[AMR][1000 genomes]
rs73421762	1.00[AMR][1000 genomes]
rs73714148	1.00[AMR][1000 genomes]
rs73714170	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104656200-104667800	Weak transcription	Gastric	stomach
2	chr7:104656600-104681800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:104656800-104667600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:104658600-104665200	Weak transcription	Fetal Intestine Large	intestine
5	chr7:104658600-104665600	Weak transcription	Colonic Mucosa	Colon
6	chr7:104658600-104671800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:104658600-104673000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:104658600-104674000	Weak transcription	Fetal Thymus	thymus
9	chr7:104658600-104674200	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:104658600-104681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:104658600-104703800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:104658800-104665200	Weak transcription	Aorta	Aorta
13	chr7:104658800-104671600	Weak transcription	Fetal Intestine Small	intestine
14	chr7:104658800-104681800	Weak transcription	Thymus	Thymus
15	chr7:104659400-104671400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr7:104659600-104667200	Enhancers	Adipose Nuclei	Adipose
17	chr7:104659600-104671400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr7:104659800-104666200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr7:104659800-104681200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:104660400-104667000	Enhancers	HepG2	liver
21	chr7:104660400-104668600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:104660800-104667600	Weak transcription	Right Atrium	heart
23	chr7:104661000-104665200	Weak transcription	Psoas Muscle	Psoas
24	chr7:104661000-104667600	Weak transcription	Lung	lung
25	chr7:104661000-104667600	Weak transcription	Pancreas	Pancrea
26	chr7:104661000-104667800	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr7:104661000-104668600	Weak transcription	Left Ventricle	heart
28	chr7:104661400-104667200	Enhancers	Colon Smooth Muscle	Colon
29	chr7:104661600-104671200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr7:104661800-104665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:104661800-104696000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:104662000-104665400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:104662000-104665400	Enhancers	Primary T cells from cord blood	blood
34	chr7:104662000-104668800	Weak transcription	Fetal Stomach	stomach
35	chr7:104662000-104671600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:104662000-104672000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr7:104662200-104665400	Weak transcription	HSMM	muscle
38	chr7:104662200-104668600	Weak transcription	Spleen	Spleen
39	chr7:104662200-104668800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:104662600-104665200	Weak transcription	Right Ventricle	heart
41	chr7:104662600-104667600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:104662600-104668600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:104662600-104671600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr7:104662800-104665200	Weak transcription	HSMMtube	muscle
45	chr7:104662800-104665600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr7:104662800-104670200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr7:104663000-104669800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:104663200-104665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:104663200-104665400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:104663200-104679400	Weak transcription	Fetal Brain Female	brain

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