Variant report

Variant	rs60730880
Chromosome Location	chr18:30442303-30442304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16963999	0.96[AFR][1000 genomes]
rs16964005	0.96[AFR][1000 genomes]
rs16964017	0.96[AFR][1000 genomes]
rs16964035	0.88[AFR][1000 genomes]
rs16964062	0.88[AFR][1000 genomes]
rs16964082	0.88[AFR][1000 genomes]
rs16964117	0.88[AFR][1000 genomes]
rs28496433	0.96[AFR][1000 genomes]
rs28516912	0.92[AFR][1000 genomes]
rs28771668	0.88[AFR][1000 genomes]
rs60766333	0.96[AFR][1000 genomes]
rs9783891	0.96[AFR][1000 genomes]
rs9783904	0.96[AFR][1000 genomes]
rs9944992	0.88[AFR][1000 genomes]
rs9945125	0.96[AFR][1000 genomes]
rs9949048	0.88[AFR][1000 genomes]
rs9949112	0.96[AFR][1000 genomes]
rs9949158	0.96[AFR][1000 genomes]
rs9951977	0.88[AFR][1000 genomes]
rs9953097	0.88[AFR][1000 genomes]
rs9956243	0.96[AFR][1000 genomes]
rs9956679	0.96[AFR][1000 genomes]
rs9958205	0.96[AFR][1000 genomes]
rs9963068	0.81[AFR][1000 genomes]
rs9965451	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30441800-30442600	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr18:30442200-30442600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr18:30442200-30442600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr18:30442200-30442600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr18:30442200-30442600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr18:30442200-30442600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr18:30442200-30442600	Active TSS	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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