Variant report

rSNPs within LD-proxies of this variant (count:18)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97903800-97907400	Enhancers	NHDF-Ad	bronchial
2	chr5:97905000-97907400	Enhancers	Osteobl	bone
3	chr5:97905000-97908200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:97905000-97908400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:97905200-97907200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:97905200-97907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:97905200-97907400	Enhancers	NH-A	brain
8	chr5:97905200-97907400	Enhancers	NHLF	lung
9	chr5:97905400-97907400	Enhancers	HSMM	muscle
10	chr5:97905600-97907200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:97905800-97907400	Enhancers	Brain Hippocampus Middle	brain
12	chr5:97906400-97907400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:97906400-97907400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:97906400-97907400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:97906400-97907400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:97906400-97907400	Enhancers	Brain Substantia Nigra	brain
17	chr5:97906600-97912000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:97906800-97909000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:97906800-97910000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:97907000-97910000	Weak transcription	Fetal Intestine Large	intestine

Quick Search: