Variant report

Variant	rs6076169
Chromosome Location	chr20:23951354-23951355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1361631	0.89[CHB][hapmap]
rs2145970	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2145971	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2208661	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2224548	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2224549	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2379307	0.94[ASN][1000 genomes]
rs2983542	0.95[ASN][1000 genomes]
rs2984251	0.96[ASN][1000 genomes]
rs2984252	0.96[ASN][1000 genomes]
rs2984254	0.95[ASN][1000 genomes]
rs2984255	0.95[ASN][1000 genomes]
rs2984256	0.96[ASN][1000 genomes]
rs2984258	0.96[ASN][1000 genomes]
rs2995100	0.89[CHB][hapmap]
rs2995685	0.89[CHB][hapmap]
rs3004166	0.96[ASN][1000 genomes]
rs3004167	0.95[ASN][1000 genomes]
rs4815251	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4815252	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4815259	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4815260	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049256	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6049259	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6049260	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6049268	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049272	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049275	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049276	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6076168	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083338	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6106762	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6132685	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs755031	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs755033	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23948800-23959000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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