Variant report

Variant	rs60765903
Chromosome Location	chr6:12007061-12007062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12189667	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12190182	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12190917	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12198183	1.00[EUR][1000 genomes]
rs12199764	0.86[ASN][1000 genomes]
rs12202320	1.00[EUR][1000 genomes]
rs12202388	1.00[EUR][1000 genomes]
rs12202981	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12204035	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12205721	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12208282	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12210876	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12212747	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12213062	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12213771	0.87[ASN][1000 genomes]
rs12216165	1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes]
rs57671359	0.86[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60027663	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60683973	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6939106	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970323	chr6:12006884-12020375	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11990800-12007200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:11995600-12007800	Weak transcription	Hela-S3	cervix
3	chr6:11998400-12007800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:11999600-12008400	Weak transcription	Psoas Muscle	Psoas
5	chr6:12001600-12008400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:12001800-12008200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:12001800-12008400	Weak transcription	Osteobl	bone
8	chr6:12002000-12007200	Weak transcription	NHDF-Ad	bronchial
9	chr6:12002000-12008200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:12002000-12008200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:12002200-12007200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:12002200-12008400	Weak transcription	Adipose Nuclei	Adipose
13	chr6:12002200-12008400	Weak transcription	Fetal Brain Female	brain
14	chr6:12002600-12007200	Weak transcription	Fetal Lung	lung
15	chr6:12002600-12007200	Weak transcription	HepG2	liver
16	chr6:12004400-12007200	Weak transcription	Fetal Heart	heart
17	chr6:12004600-12008000	Weak transcription	Brain Germinal Matrix	brain
18	chr6:12005600-12007400	Enhancers	K562	blood
19	chr6:12007000-12008200	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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