Variant report

Variant	rs60769152
Chromosome Location	chr9:116566964-116566965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12551439	0.86[AFR][1000 genomes]
rs73548477	1.00[AMR][1000 genomes]
rs73548538	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548540	1.00[AMR][1000 genomes]
rs73548554	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548557	1.00[AMR][1000 genomes]
rs73550446	1.00[AMR][1000 genomes]
rs73550942	1.00[AMR][1000 genomes]
rs73550944	1.00[AMR][1000 genomes]
rs73550967	1.00[AMR][1000 genomes]
rs73552319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116557800-116569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116566600-116567000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:116566800-116567000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:116566800-116567200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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