Variant report

Variant	rs60796909
Chromosome Location	chr20:24191739-24191740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56166503	1.00[AFR][1000 genomes]
rs57170841	1.00[AFR][1000 genomes]
rs6083439	0.81[AFR][1000 genomes]
rs73333898	1.00[AFR][1000 genomes]
rs73333901	1.00[AFR][1000 genomes]
rs73335810	1.00[AFR][1000 genomes]
rs73902716	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24188000-24192200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr20:24188400-24192200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:24188600-24192200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr20:24188800-24192600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:24189200-24192200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr20:24189400-24192600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:24189400-24192600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr20:24189600-24193200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr20:24189800-24192200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr20:24190400-24196000	Enhancers	Fetal Intestine Large	intestine
11	chr20:24190800-24192800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr20:24191400-24191800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr20:24191400-24192000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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