Variant report

Variant	rs6080134
Chromosome Location	chr20:16118453-16118454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11904993	0.86[ASN][1000 genomes]
rs11905009	0.86[ASN][1000 genomes]
rs1323306	0.85[ASN][1000 genomes]
rs1323308	0.86[ASN][1000 genomes]
rs1323309	0.86[ASN][1000 genomes]
rs1535597	0.89[EUR][1000 genomes]
rs17726942	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1830694	0.88[ASN][1000 genomes]
rs1885940	0.84[ASN][1000 genomes]
rs1885943	0.85[EUR][1000 genomes]
rs1969773	0.82[ASN][1000 genomes]
rs1969775	0.83[ASN][1000 genomes]
rs2224735	0.86[ASN][1000 genomes]
rs2256065	0.86[ASN][1000 genomes]
rs2327989	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2486224	0.87[ASN][1000 genomes]
rs2788924	0.86[ASN][1000 genomes]
rs2788925	0.86[ASN][1000 genomes]
rs2788926	0.86[ASN][1000 genomes]
rs35828530	0.86[ASN][1000 genomes]
rs4142099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4239715	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4239716	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4814437	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4814439	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4814440	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6034387	0.86[ASN][1000 genomes]
rs6034388	0.86[ASN][1000 genomes]
rs6034389	0.86[ASN][1000 genomes]
rs6034390	0.86[ASN][1000 genomes]
rs6034391	0.86[ASN][1000 genomes]
rs6043732	0.83[ASN][1000 genomes]
rs6043733	0.83[ASN][1000 genomes]
rs6043734	0.83[ASN][1000 genomes]
rs6043735	0.84[ASN][1000 genomes]
rs6043736	0.84[ASN][1000 genomes]
rs6043737	0.86[ASN][1000 genomes]
rs6043738	0.86[ASN][1000 genomes]
rs6043739	0.86[ASN][1000 genomes]
rs6043740	0.86[ASN][1000 genomes]
rs6043741	0.86[ASN][1000 genomes]
rs6043742	0.83[ASN][1000 genomes]
rs6043753	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6075014	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6075015	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6075017	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6075018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6080128	0.89[EUR][1000 genomes]
rs6080131	0.93[EUR][1000 genomes]
rs6080147	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6080148	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6105528	0.86[ASN][1000 genomes]
rs6110905	0.81[EUR][1000 genomes]
rs6110907	0.86[ASN][1000 genomes]
rs6110910	0.86[ASN][1000 genomes]
rs6110922	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6135675	0.86[ASN][1000 genomes]
rs8114080	0.84[ASN][1000 genomes]
rs8114278	0.86[ASN][1000 genomes]
rs8121051	0.86[ASN][1000 genomes]
rs992606	0.86[ASN][1000 genomes]
rs994219	0.84[ASN][1000 genomes]
rs994220	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16104400-16121600	Weak transcription	Primary B cells from cord blood	blood

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