Variant report

Variant	rs60811583
Chromosome Location	chr10:50568098-50568099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50567042..50568953-chr10:50570259..50573072,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10732632	0.86[EUR][1000 genomes]
rs10745260	0.86[EUR][1000 genomes]
rs17009940	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009941	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009956	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009957	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009961	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010002	1.00[EUR][1000 genomes]
rs1977293	1.00[EUR][1000 genomes]
rs2889781	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889783	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4562729	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58651064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58733378	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59096752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59572955	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59959035	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61296942	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7900263	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50565600-50569000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:50565600-50569200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:50567200-50571600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:50567400-50568800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:50567400-50569200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:50567400-50569200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr10:50567400-50569200	Enhancers	Spleen	Spleen
8	chr10:50567400-50569600	Enhancers	Left Ventricle	heart
9	chr10:50567600-50568600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:50567600-50569000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:50567600-50569000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:50567600-50569200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:50567600-50569400	Enhancers	Fetal Muscle Leg	muscle
14	chr10:50567600-50569400	Enhancers	Lung	lung
15	chr10:50567600-50569600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:50567600-50572000	Enhancers	Pancreas	Pancrea
17	chr10:50567800-50568200	Enhancers	Fetal Thymus	thymus
18	chr10:50567800-50568400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:50567800-50568600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr10:50567800-50568600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:50567800-50568600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:50567800-50569000	Enhancers	Adipose Nuclei	Adipose
23	chr10:50567800-50569000	Bivalent Enhancer	Placenta	Placenta
24	chr10:50567800-50569000	Bivalent Enhancer	Fetal Stomach	stomach
25	chr10:50567800-50569000	Enhancers	HepG2	liver
26	chr10:50567800-50569400	Enhancers	Right Atrium	heart
27	chr10:50567800-50569600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:50567800-50569600	Enhancers	Fetal Heart	heart
29	chr10:50567800-50570200	Enhancers	Right Ventricle	heart
30	chr10:50568000-50568400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr10:50568000-50568400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:50568000-50568400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr10:50568000-50568400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr10:50568000-50568400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:50568000-50568400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:50568000-50568400	Enhancers	Brain Angular Gyrus	brain
37	chr10:50568000-50568400	Enhancers	GM12878-XiMat	blood
38	chr10:50568000-50568400	Enhancers	NHEK	skin
39	chr10:50568000-50568600	Enhancers	Primary hematopoietic stem cells	blood
40	chr10:50568000-50568600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:50568000-50568600	Enhancers	Brain Anterior Caudate	brain
42	chr10:50568000-50568600	Enhancers	Fetal Lung	lung
43	chr10:50568000-50568800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:50568000-50568800	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr10:50568000-50568800	Enhancers	Esophagus	oesophagus
46	chr10:50568000-50568800	Enhancers	HSMM	muscle
47	chr10:50568000-50568800	Enhancers	NH-A	brain
48	chr10:50568000-50569000	Enhancers	Colon Smooth Muscle	Colon
49	chr10:50568000-50569000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
50	chr10:50568000-50569000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle

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