Variant report

Variant	rs6083555
Chromosome Location	chr20:24539941-24539942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13039850	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1326299	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1409371	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1980821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980822	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980823	0.91[JPT][hapmap]
rs35191387	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815275	0.81[ASN][1000 genomes]
rs4815278	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4815279	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036837	0.87[JPT][hapmap]
rs6076237	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6076238	0.83[ASN][1000 genomes]
rs6083556	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083558	0.90[JPT][hapmap]
rs6083562	0.80[JPT][hapmap]
rs6138330	0.80[JPT][hapmap]
rs6138331	0.84[JPT][hapmap]
rs727409	0.82[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8126241	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
2	chr20:24527400-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr20:24528800-24546400	Weak transcription	Aorta	Aorta
4	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:24539400-24541000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr20:24539800-24540000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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