Variant report

Variant	rs60860075
Chromosome Location	chr1:194020894-194020895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1487527	1.00[AMR][1000 genomes]
rs16836190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836491	1.00[AMR][1000 genomes]
rs60277362	1.00[AMR][1000 genomes]
rs60574560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052905	1.00[AMR][1000 genomes]
rs73052916	1.00[AMR][1000 genomes]
rs73052919	1.00[AMR][1000 genomes]
rs73052931	1.00[AMR][1000 genomes]
rs73052935	1.00[AMR][1000 genomes]
rs73052944	1.00[AMR][1000 genomes]
rs73064707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070728	1.00[AMR][1000 genomes]
rs73070733	1.00[AMR][1000 genomes]
rs73070741	1.00[AMR][1000 genomes]
rs73070750	1.00[AMR][1000 genomes]
rs73070753	1.00[AMR][1000 genomes]
rs73070757	1.00[AMR][1000 genomes]
rs73070766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194020200-194021600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr1:194020400-194030800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:194020600-194021800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:194020800-194021400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:194020800-194021400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:194020800-194021400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:194020800-194021600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:194020800-194030800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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