Variant report

Variant	rs60879751
Chromosome Location	chr13:87561884-87561885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr13:87561569-87561897	K562	blood:	n/a	n/a

Variant related genes	Relation type
LINC00430	TF binding region

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs55668499	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55723559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55810011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55920859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55923208	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56062757	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195576	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56826386	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57925385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58190757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58393016	1.00[AMR][1000 genomes]
rs59003153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59375365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59641360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59812988	1.00[AMR][1000 genomes]
rs61242827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61303386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101974	1.00[AMR][1000 genomes]
rs74101976	1.00[AMR][1000 genomes]
rs74101978	1.00[AMR][1000 genomes]
rs74101982	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101986	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102211	1.00[AMR][1000 genomes]
rs74103431	1.00[AMR][1000 genomes]
rs74103433	1.00[AMR][1000 genomes]
rs74103603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103612	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103616	1.00[AFR][1000 genomes]
rs74103617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103630	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103656	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103658	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103660	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103667	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103668	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103671	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103695	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104820	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104839	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104840	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900763	chr13:87073397-87658986	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv900775	chr13:87311967-87658986	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3439251	chr13:87398732-87699077	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900776	chr13:87407377-87596606	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv900777	chr13:87407377-87624393	Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv900778	chr13:87407377-87658986	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900779	chr13:87443524-87658986	Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1046278	chr13:87461244-87712231	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1044991	chr13:87461244-87713936	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv900780	chr13:87492357-87624393	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv900781	chr13:87492357-87658986	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv900782	chr13:87536247-87658986	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv832671	chr13:87539345-87707707	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv900783	chr13:87546157-87643970	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv900784	chr13:87546157-87647740	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87559800-87563000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:87561000-87562200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:87561600-87562000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:87561600-87562000	Active TSS	Colon Smooth Muscle	Colon
5	chr13:87561800-87562000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:87561800-87562000	Enhancers	Fetal Lung	lung

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