Variant report

Variant	rs60890210
Chromosome Location	chr15:56114778-56114779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1042477	0.87[ASN][1000 genomes]
rs11071228	0.86[ASN][1000 genomes]
rs11630780	0.87[ASN][1000 genomes]
rs11632977	0.87[ASN][1000 genomes]
rs11633313	0.83[ASN][1000 genomes]
rs12102014	0.87[ASN][1000 genomes]
rs12102020	0.87[ASN][1000 genomes]
rs12898589	0.86[ASN][1000 genomes]
rs12910830	0.87[ASN][1000 genomes]
rs13380185	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16976585	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2288344	0.87[ASN][1000 genomes]
rs2288345	0.87[ASN][1000 genomes]
rs2414444	0.87[ASN][1000 genomes]
rs35040841	0.87[ASN][1000 genomes]
rs56333939	0.87[ASN][1000 genomes]
rs7162435	0.87[ASN][1000 genomes]
rs7175686	0.88[ASN][1000 genomes]
rs7176225	0.88[ASN][1000 genomes]
rs8024944	0.87[ASN][1000 genomes]
rs8026172	0.87[ASN][1000 genomes]
rs8028559	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56095800-56128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56106000-56131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:56111000-56115000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:56111000-56115200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:56111000-56115200	Weak transcription	Osteobl	bone
6	chr15:56112200-56121800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:56112400-56124600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:56112600-56115200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:56112600-56119400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:56112600-56122000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:56112600-56122000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:56112600-56122200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:56112600-56123800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:56112600-56133600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:56113000-56115200	Weak transcription	Ovary	ovary
16	chr15:56114400-56116800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:56114600-56128200	Weak transcription	Esophagus	oesophagus

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