Variant report

Variant	rs60890491
Chromosome Location	chr13:51393459-51393460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73497513	1.00[AMR][1000 genomes]
rs73497518	1.00[AMR][1000 genomes]
rs73497540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497566	1.00[AMR][1000 genomes]
rs73497578	1.00[AMR][1000 genomes]
rs73497583	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51375600-51416400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:51387400-51405400	Weak transcription	Thymus	Thymus
3	chr13:51388400-51398400	Strong transcription	Fetal Thymus	thymus
4	chr13:51390800-51395400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:51391000-51398000	Strong transcription	Dnd41	blood
6	chr13:51391800-51396000	Weak transcription	Brain Germinal Matrix	brain
7	chr13:51393400-51394600	Strong transcription	Fetal Brain Female	brain
8	chr13:51393400-51398000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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