Variant report

Variant	rs60918217
Chromosome Location	chr6:55956308-55956309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMP5-2	chr6:55956295-55956486	NONHSAT113238

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2841005	0.83[AFR][1000 genomes]
rs73457078	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73457085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461307	0.86[AFR][1000 genomes]
rs73461311	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55933200-55961000	Weak transcription	Placenta	Placenta
3	chr6:55953800-55957600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:55954000-55956600	Active TSS	Fetal Heart	heart
5	chr6:55954000-55957600	Weak transcription	Fetal Lung	lung
6	chr6:55954400-55956600	Active TSS	Right Atrium	heart
7	chr6:55954800-55956600	Active TSS	Right Ventricle	heart
8	chr6:55954800-55960400	Weak transcription	Fetal Kidney	kidney
9	chr6:55955200-55956400	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr6:55955200-55956600	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:55955600-55956600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:55955600-55956600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:55955600-55956600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:55955600-55956600	Enhancers	A549	lung
15	chr6:55955600-55956800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:55955600-55956800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:55955600-55956800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:55955600-55956800	Enhancers	HepG2	liver
19	chr6:55955800-55956400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:55955800-55956400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:55955800-55956400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:55955800-55956600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:55955800-55956600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:55955800-55956600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr6:55955800-55956600	Active TSS	Fetal Muscle Leg	muscle
26	chr6:55955800-55956800	Enhancers	HSMM	muscle
27	chr6:55955800-55956800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:55955800-55957000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:55956000-55956400	Active TSS	Psoas Muscle	Psoas
30	chr6:55956000-55956400	Enhancers	NHEK	skin
31	chr6:55956000-55956600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:55956000-55956600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:55956000-55956600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:55956000-55956600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:55956000-55956600	Active TSS	Left Ventricle	heart
36	chr6:55956000-55956600	Enhancers	Hela-S3	cervix
37	chr6:55956000-55956600	Enhancers	HUVEC	blood vessel
38	chr6:55956000-55956600	Flanking Active TSS	NH-A	brain
39	chr6:55956000-55956800	Enhancers	Rectal Smooth Muscle	rectum
40	chr6:55956200-55956400	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr6:55956200-55956600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr6:55956200-55956600	Enhancers	H9 Cell Line	embryonic stem cell
43	chr6:55956200-55956600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:55956200-55956600	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:55956200-55956600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:55956200-55956600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:55956200-55956600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:55956200-55956600	Active TSS	Aorta	Aorta
49	chr6:55956200-55956600	Active TSS	Fetal Muscle Trunk	muscle
50	chr6:55956200-55956600	Enhancers	Sigmoid Colon	Sigmoid Colon

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