Variant report

Variant	rs60924405
Chromosome Location	chr4:143423587-143423588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10011782	0.94[EUR][1000 genomes]
rs12108640	0.93[EUR][1000 genomes]
rs1425531	0.92[EUR][1000 genomes]
rs1425533	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425536	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425537	0.93[EUR][1000 genomes]
rs17016306	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1834391	0.95[EUR][1000 genomes]
rs2113996	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113997	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2322795	0.93[EUR][1000 genomes]
rs2874841	0.92[EUR][1000 genomes]
rs2874865	0.95[EUR][1000 genomes]
rs28822497	0.91[EUR][1000 genomes]
rs3844178	0.94[EUR][1000 genomes]
rs4975308	0.93[EUR][1000 genomes]
rs713071	0.94[EUR][1000 genomes]
rs976564	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143422400-143426600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:143422600-143427400	Weak transcription	Fetal Heart	heart
3	chr4:143423200-143427600	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links