Variant report

Variant	rs60954989
Chromosome Location	chr1:210868377-210868378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210849903..210852743-chr1:210867034..210869915,2	K562	blood:
2	chr1:210846826..210848354-chr1:210867968..210870812,2	K562	blood:
3	chr1:210865100..210867541-chr1:210867654..210870691,4	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34965460	0.85[AFR][1000 genomes]
rs35081959	0.90[AFR][1000 genomes]
rs58497140	1.00[AFR][1000 genomes]
rs59540052	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59663537	1.00[AFR][1000 genomes]
rs73067432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067442	1.00[EUR][1000 genomes]
rs73067447	1.00[EUR][1000 genomes]
rs73067449	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067455	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv468083	chr1:210854815-210876192	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv549123	chr1:210854815-210876192	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210838000-210880400	Weak transcription	Gastric	stomach
2	chr1:210846400-210884600	Weak transcription	Ovary	ovary
3	chr1:210857200-210882600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210857800-210870800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:210858000-210880400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:210864400-210889800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:210864800-210868600	Enhancers	Fetal Muscle Leg	muscle
8	chr1:210865200-210869800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:210865600-210869200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:210865600-210870600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:210865800-210869400	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:210866000-210868600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:210866000-210869800	Weak transcription	Brain Substantia Nigra	brain
14	chr1:210866200-210870800	Enhancers	HSMMtube	muscle
15	chr1:210866600-210869400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:210866800-210869400	Weak transcription	GM12878-XiMat	blood
17	chr1:210866800-210872000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:210866800-210884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:210868000-210869000	Weak transcription	Brain Anterior Caudate	brain
20	chr1:210868000-210871200	Enhancers	HSMM	muscle
21	chr1:210868200-210869200	Weak transcription	Fetal Muscle Trunk	muscle

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