Variant report

Variant	rs60969274
Chromosome Location	chr6:150924134-150924135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150914794..150917748-chr6:150922118..150924160,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56115385	1.00[AMR][1000 genomes]
rs57385185	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58842154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59573747	0.98[AFR][1000 genomes]
rs61081754	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902794	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606248	1.00[AMR][1000 genomes]
rs73619627	0.93[AFR][1000 genomes]
rs73619628	0.98[AFR][1000 genomes]
rs73619632	0.98[AFR][1000 genomes]
rs73619646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv437526	chr6:150923115-150926499	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv464080	chr6:150923115-150941310	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv604851	chr6:150923115-150941310	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150922200-150927600	Weak transcription	Spleen	Spleen
2	chr6:150922200-150930600	Weak transcription	Aorta	Aorta
3	chr6:150922400-150924800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:150922400-150927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:150922400-150927600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:150922400-150927600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:150922400-150941400	Weak transcription	Colonic Mucosa	Colon
8	chr6:150922600-150927800	Weak transcription	Small Intestine	intestine
9	chr6:150922600-150928000	Weak transcription	Liver	Liver
10	chr6:150922800-150924200	Enhancers	Fetal Kidney	kidney
11	chr6:150922800-150927600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:150922800-150929600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:150923000-150927000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:150923000-150927200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:150923000-150927200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:150923000-150927400	Weak transcription	Placenta	Placenta
17	chr6:150923000-150927400	Weak transcription	Right Atrium	heart
18	chr6:150923000-150927400	Weak transcription	HMEC	breast
19	chr6:150923000-150927600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:150923000-150938600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:150923400-150925200	Enhancers	Primary B cells from cord blood	blood
22	chr6:150923600-150926800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:150923600-150930800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:150923800-150924200	Weak transcription	Thymus	Thymus
25	chr6:150923800-150925600	Enhancers	Fetal Thymus	thymus

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