Variant report

Variant	rs60994441
Chromosome Location	chr1:71285495-71285496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11804440	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11805293	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11805731	0.81[ASN][1000 genomes]
rs11807666	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11808587	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11808606	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11809115	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12566076	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13306022	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34115027	1.00[EUR][1000 genomes]
rs34247575	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34580971	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35284022	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35327754	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35946140	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35952145	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41287914	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57313668	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58239962	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60466683	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6667891	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6683228	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71283400-71286200	Enhancers	Fetal Heart	heart
2	chr1:71283600-71286200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:71284600-71285600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:71285000-71286000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:71285000-71286400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr1:71285200-71285600	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links