Variant report

Variant	rs60999252
Chromosome Location	chr6:129048375-129048376
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:128975771..128978222-chr6:129045702..129048467,2	MCF-7	breast:
2	chr6:129041873..129044380-chr6:129047033..129049794,2	MCF-7	breast:
3	chr6:129047509..129050452-chr6:129051618..129053912,2	K562	blood:
4	chr6:128839526..128843446-chr6:129046939..129050165,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1281243	1.00[ASN][1000 genomes]
rs1281244	1.00[ASN][1000 genomes]
rs55986700	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6569556	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72973488	0.92[AFR][1000 genomes]
rs72975313	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72975384	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72975393	0.87[EUR][1000 genomes]
rs72975394	0.87[EUR][1000 genomes]
rs72975400	0.87[EUR][1000 genomes]
rs72977310	0.87[EUR][1000 genomes]
rs72985545	0.90[AFR][1000 genomes]
rs774289	1.00[ASN][1000 genomes]
rs9321130	0.87[EUR][1000 genomes]
rs9482916	1.00[ASN][1000 genomes]
rs9482917	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9482918	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9492055	1.00[ASN][1000 genomes]
rs9492057	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492059	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492060	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492061	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492062	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492063	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492064	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492068	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9492069	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9492070	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9492074	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:129046600-129058000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:129046800-129058000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:129047200-129052600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:129047200-129052600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:129047200-129052600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:129047200-129055600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:129047200-129056000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:129047200-129056200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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