Variant report

Variant	rs61026501
Chromosome Location	chr4:47936400-47936401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1964425	0.85[AFR][1000 genomes]
rs41390147	1.00[AMR][1000 genomes]
rs55704169	1.00[AMR][1000 genomes]
rs55749210	0.92[AFR][1000 genomes]
rs56778417	1.00[AMR][1000 genomes]
rs60195275	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60374830	1.00[AMR][1000 genomes]
rs60911870	0.88[AFR][1000 genomes]
rs73145996	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145999	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73147914	1.00[AMR][1000 genomes]
rs73147925	1.00[AMR][1000 genomes]
rs73147926	1.00[AMR][1000 genomes]
rs73147933	1.00[AMR][1000 genomes]
rs73147940	1.00[AMR][1000 genomes]
rs73814604	0.85[AFR][1000 genomes]
rs73814607	0.85[AFR][1000 genomes]
rs73814609	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1013947	chr4:47915527-48052824	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537082	chr4:47915527-48052824	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1006745	chr4:47935250-48052824	Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv537083	chr4:47935250-48052824	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47933200-47941600	Weak transcription	Pancreas	Pancrea
2	chr4:47936000-47936400	Enhancers	Liver	Liver
3	chr4:47936000-47936800	Enhancers	Fetal Brain Female	brain
4	chr4:47936200-47936400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:47936200-47936600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:47936200-47936600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:47936400-47936600	Bivalent Enhancer	HUVEC	blood vessel
8	chr4:47936400-47940200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:47936400-47950600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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