Variant report

Variant	rs61036532
Chromosome Location	chr11:72017321-72017322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72016664..72019102-chr11:72142730..72145260,3	K562	blood:
2	chr11:72015161..72017775-chr11:72031006..72032661,2	K562	blood:
3	chr11:72016474..72019263-chr11:72019468..72021244,2	K562	blood:
4	chr11:72003308..72005316-chr11:72016996..72018605,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162129	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12416804	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418637	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12421674	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17162126	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2508201	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2508865	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3750906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474629	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs504217	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55721826	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56076328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171963	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57614093	0.81[EUR][1000 genomes]
rs58044536	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58945323	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59612321	0.81[EUR][1000 genomes]
rs680660	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73528886	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73530718	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73530724	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73530754	0.80[EUR][1000 genomes]
rs73530756	0.80[EUR][1000 genomes]
rs7940062	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71995600-72028000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:72001000-72039800	Weak transcription	Psoas Muscle	Psoas
3	chr11:72001800-72019200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:72001800-72032600	Weak transcription	A549	lung
5	chr11:72002000-72025400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:72002200-72025600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:72002600-72024000	Weak transcription	Small Intestine	intestine
8	chr11:72002800-72025400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:72002800-72044600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:72003200-72017400	Strong transcription	Fetal Muscle Trunk	muscle
11	chr11:72003200-72019000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:72003200-72019600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:72003200-72019800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:72003200-72020000	Strong transcription	Placenta	Placenta
15	chr11:72003200-72020400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:72003200-72025800	Strong transcription	Primary T cells from cord blood	blood
17	chr11:72003200-72026800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:72003200-72028600	Strong transcription	Lung	lung
19	chr11:72003200-72029000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:72003200-72031200	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr11:72003200-72033600	Strong transcription	Dnd41	blood
22	chr11:72003200-72034200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:72003200-72034400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:72003200-72041800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:72003200-72041800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:72003400-72019400	Strong transcription	Liver	Liver
27	chr11:72003400-72019800	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:72003400-72019800	Strong transcription	Adipose Nuclei	Adipose
29	chr11:72004600-72019800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:72005200-72025600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:72006000-72019200	Weak transcription	NHDF-Ad	bronchial
32	chr11:72006000-72034600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:72006200-72040000	Weak transcription	Stomach Mucosa	stomach
34	chr11:72006800-72020000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:72006800-72025800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:72008400-72025400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:72008400-72044600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr11:72010000-72020000	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:72010400-72018800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:72010600-72018600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:72010600-72021000	Strong transcription	Primary B cells from cord blood	blood
42	chr11:72010800-72018200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:72011400-72019400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:72011400-72020600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:72011600-72025200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:72012000-72019600	Strong transcription	HSMMtube	muscle
47	chr11:72012200-72019400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:72012400-72020200	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:72013200-72020800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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