Variant report

Variant	rs61056103
Chromosome Location	chr14:70388612-70388613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70382727..70385452-chr14:70388127..70390394,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59758662	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60056270	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61980634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980647	0.88[EUR][1000 genomes]
rs61980648	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61980649	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61980650	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61980653	0.88[EUR][1000 genomes]
rs61980654	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70377800-70394400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:70381800-70390200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:70384800-70394400	Weak transcription	HepG2	liver
4	chr14:70386600-70389200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:70387200-70389200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:70387400-70389400	Enhancers	Osteobl	bone
7	chr14:70387400-70389600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:70387400-70389600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:70387400-70390400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:70387600-70389400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:70387600-70389400	Enhancers	Spleen	Spleen
12	chr14:70387600-70390200	Weak transcription	Hela-S3	cervix
13	chr14:70387600-70390800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:70387600-70391800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:70387800-70390200	Weak transcription	Liver	Liver
16	chr14:70388000-70389200	Enhancers	Brain Germinal Matrix	brain
17	chr14:70388000-70389400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:70388000-70389600	Enhancers	Brain Substantia Nigra	brain
19	chr14:70388200-70389000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:70388200-70389000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:70388200-70389600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr14:70388200-70389600	Enhancers	Brain Hippocampus Middle	brain
23	chr14:70388200-70389800	Enhancers	Brain Cingulate Gyrus	brain
24	chr14:70388600-70389000	Bivalent Enhancer	Fetal Stomach	stomach
25	chr14:70388600-70389200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr14:70388600-70389400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:70388600-70389600	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links