Variant report

Variant	rs61064518
Chromosome Location	chr8:10701916-10701917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10696105..10699610-chr8:10701195..10704333,4	K562	blood:
2	chr8:10700359..10702352-chr8:10709225..10710771,2	K562	blood:
3	chr8:10695083..10698096-chr8:10698399..10704123,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253695	Chromatin interaction
ENSG00000258724	Chromatin interaction
ENSG00000254093	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1052523	0.92[EUR][1000 genomes]
rs11997941	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546540	1.00[ASN][1000 genomes]
rs13260821	0.84[EUR][1000 genomes]
rs13275368	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277664	0.83[EUR][1000 genomes]
rs13280573	0.83[EUR][1000 genomes]
rs17152442	0.80[EUR][1000 genomes]
rs17152492	0.83[EUR][1000 genomes]
rs17152619	0.86[EUR][1000 genomes]
rs17152632	0.84[EUR][1000 genomes]
rs17721019	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2033368	1.00[ASN][1000 genomes]
rs2409652	1.00[ASN][1000 genomes]
rs2409653	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409654	1.00[ASN][1000 genomes]
rs2409655	1.00[ASN][1000 genomes]
rs2409656	1.00[ASN][1000 genomes]
rs2409666	1.00[ASN][1000 genomes]
rs2898244	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898246	0.80[EUR][1000 genomes]
rs34349857	0.87[EUR][1000 genomes]
rs34535545	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35039898	0.90[EUR][1000 genomes]
rs35660623	0.87[EUR][1000 genomes]
rs35873156	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60666967	1.00[ASN][1000 genomes]
rs6601531	0.85[EUR][1000 genomes]
rs6601532	0.85[EUR][1000 genomes]
rs6982062	0.85[EUR][1000 genomes]
rs6983180	0.80[EUR][1000 genomes]
rs6983778	0.84[EUR][1000 genomes]
rs6984171	1.00[ASN][1000 genomes]
rs6989930	0.85[EUR][1000 genomes]
rs6990041	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992312	0.87[EUR][1000 genomes]
rs6993463	0.85[EUR][1000 genomes]
rs6993632	0.85[EUR][1000 genomes]
rs6993753	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005389	0.92[EUR][1000 genomes]
rs7006707	0.80[EUR][1000 genomes]
rs7015820	0.85[EUR][1000 genomes]
rs73209946	1.00[ASN][1000 genomes]
rs73529608	0.80[EUR][1000 genomes]
rs73531562	0.92[EUR][1000 genomes]
rs73662638	1.00[ASN][1000 genomes]
rs73662640	1.00[ASN][1000 genomes]
rs73662642	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73662643	1.00[ASN][1000 genomes]
rs753786	1.00[ASN][1000 genomes]
rs7814489	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969476	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv508497	chr8:10680621-10750255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10698000-10702400	Weak transcription	Liver	Liver
2	chr8:10698000-10707800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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