Variant report

Variant	rs6106823
Chromosome Location	chr20:24270178-24270179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24268351..24270345-chr20:24275470..24277004,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs57557589	0.86[EUR][1000 genomes]
rs59723501	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6049565	0.88[EUR][1000 genomes]
rs60640318	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106819	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106820	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106821	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106822	0.83[EUR][1000 genomes]
rs6106824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106825	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106833	1.00[EUR][1000 genomes]
rs6106834	1.00[EUR][1000 genomes]
rs6106835	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106836	1.00[EUR][1000 genomes]
rs6106837	1.00[EUR][1000 genomes]
rs6106838	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106839	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106841	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106842	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106843	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106844	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106845	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106846	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106847	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106848	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106849	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106850	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114592	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114593	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114594	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114595	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114596	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114597	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114598	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114599	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114601	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114602	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114604	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114606	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114612	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114613	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114616	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114617	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114618	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114619	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114627	1.00[EUR][1000 genomes]
rs6114629	1.00[EUR][1000 genomes]
rs6114630	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114631	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114632	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114633	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114634	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114635	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114636	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114637	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114638	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114639	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114640	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114641	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114642	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114643	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114645	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114646	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114647	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114648	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114649	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114650	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114651	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114652	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61212262	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330483	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73330497	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902774	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902777	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902801	1.00[EUR][1000 genomes]
rs926995	1.00[EUR][1000 genomes]
rs926996	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24264000-24270400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr20:24270000-24270400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:24270000-24270400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr20:24270000-24270400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr20:24270000-24270600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr20:24270000-24270600	Enhancers	Primary T cells from cord blood	blood
7	chr20:24270000-24270600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr20:24270000-24270800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr20:24270000-24271000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr20:24270000-24271600	Flanking Active TSS	Dnd41	blood

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