Variant report

Variant	rs6106837
Chromosome Location	chr20:24284845-24284846
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24284269..24286790-chr20:24295761..24298544,3	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs57557589	0.86[EUR][1000 genomes]
rs59723501	1.00[EUR][1000 genomes]
rs6049565	0.88[EUR][1000 genomes]
rs60640318	1.00[EUR][1000 genomes]
rs6106819	1.00[EUR][1000 genomes]
rs6106820	1.00[EUR][1000 genomes]
rs6106821	1.00[EUR][1000 genomes]
rs6106822	0.83[EUR][1000 genomes]
rs6106823	1.00[EUR][1000 genomes]
rs6106824	1.00[EUR][1000 genomes]
rs6106825	1.00[EUR][1000 genomes]
rs6106833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106835	1.00[EUR][1000 genomes]
rs6106836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106838	1.00[EUR][1000 genomes]
rs6106839	1.00[EUR][1000 genomes]
rs6106840	1.00[EUR][1000 genomes]
rs6106841	1.00[EUR][1000 genomes]
rs6106842	1.00[EUR][1000 genomes]
rs6106843	1.00[EUR][1000 genomes]
rs6106844	1.00[EUR][1000 genomes]
rs6106845	1.00[EUR][1000 genomes]
rs6106846	1.00[EUR][1000 genomes]
rs6106847	1.00[EUR][1000 genomes]
rs6106848	1.00[EUR][1000 genomes]
rs6106849	1.00[EUR][1000 genomes]
rs6106850	1.00[EUR][1000 genomes]
rs6114592	1.00[EUR][1000 genomes]
rs6114593	1.00[EUR][1000 genomes]
rs6114594	1.00[EUR][1000 genomes]
rs6114595	1.00[EUR][1000 genomes]
rs6114596	1.00[EUR][1000 genomes]
rs6114597	1.00[EUR][1000 genomes]
rs6114598	1.00[EUR][1000 genomes]
rs6114599	1.00[EUR][1000 genomes]
rs6114601	1.00[EUR][1000 genomes]
rs6114602	1.00[EUR][1000 genomes]
rs6114604	1.00[EUR][1000 genomes]
rs6114606	1.00[EUR][1000 genomes]
rs6114612	1.00[EUR][1000 genomes]
rs6114613	1.00[EUR][1000 genomes]
rs6114616	1.00[EUR][1000 genomes]
rs6114617	1.00[EUR][1000 genomes]
rs6114618	1.00[EUR][1000 genomes]
rs6114619	1.00[EUR][1000 genomes]
rs6114627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114630	1.00[EUR][1000 genomes]
rs6114631	1.00[EUR][1000 genomes]
rs6114632	1.00[EUR][1000 genomes]
rs6114633	1.00[EUR][1000 genomes]
rs6114634	1.00[EUR][1000 genomes]
rs6114635	1.00[EUR][1000 genomes]
rs6114636	1.00[EUR][1000 genomes]
rs6114637	1.00[EUR][1000 genomes]
rs6114638	1.00[EUR][1000 genomes]
rs6114639	1.00[EUR][1000 genomes]
rs6114640	1.00[EUR][1000 genomes]
rs6114641	1.00[EUR][1000 genomes]
rs6114642	1.00[EUR][1000 genomes]
rs6114643	1.00[EUR][1000 genomes]
rs6114645	1.00[EUR][1000 genomes]
rs6114646	1.00[EUR][1000 genomes]
rs6114647	1.00[EUR][1000 genomes]
rs6114648	1.00[EUR][1000 genomes]
rs6114649	1.00[EUR][1000 genomes]
rs6114650	1.00[EUR][1000 genomes]
rs6114651	1.00[EUR][1000 genomes]
rs6114652	1.00[EUR][1000 genomes]
rs61212262	1.00[EUR][1000 genomes]
rs73330483	1.00[EUR][1000 genomes]
rs73330497	1.00[EUR][1000 genomes]
rs73902774	1.00[EUR][1000 genomes]
rs73902777	1.00[EUR][1000 genomes]
rs73902801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs926995	1.00[EUR][1000 genomes]
rs926996	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6106837	LY96	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24284600-24285800	Weak transcription	Brain Cingulate Gyrus	brain

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