Variant report

Variant	rs61072469
Chromosome Location	chr2:21138537-21138538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11893093	1.00[EUR][1000 genomes]
rs12713675	1.00[EUR][1000 genomes]
rs12720770	1.00[EUR][1000 genomes]
rs12720812	1.00[EUR][1000 genomes]
rs12720813	1.00[EUR][1000 genomes]
rs12720852	1.00[EUR][1000 genomes]
rs12720855	1.00[EUR][1000 genomes]
rs1437408	1.00[EUR][1000 genomes]
rs16988071	1.00[EUR][1000 genomes]
rs1866043	1.00[EUR][1000 genomes]
rs340605	1.00[EUR][1000 genomes]
rs340608	1.00[EUR][1000 genomes]
rs340614	1.00[EUR][1000 genomes]
rs548324	1.00[EUR][1000 genomes]
rs553687	1.00[EUR][1000 genomes]
rs571566	1.00[EUR][1000 genomes]
rs582107	1.00[EUR][1000 genomes]
rs59995050	1.00[EUR][1000 genomes]
rs61743299	1.00[EUR][1000 genomes]
rs642152	1.00[EUR][1000 genomes]
rs648568	1.00[EUR][1000 genomes]
rs662193	1.00[EUR][1000 genomes]
rs6759981	1.00[EUR][1000 genomes]
rs72654435	1.00[EUR][1000 genomes]
rs72888848	1.00[EUR][1000 genomes]
rs72888854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72888855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72888859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890734	1.00[EUR][1000 genomes]
rs72890738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890758	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890763	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890771	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890775	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890778	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890781	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890784	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890789	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890791	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72902534	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72902535	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72902538	1.00[EUR][1000 genomes]
rs72902540	1.00[EUR][1000 genomes]
rs72902541	1.00[EUR][1000 genomes]
rs72902542	1.00[EUR][1000 genomes]
rs72902544	1.00[EUR][1000 genomes]
rs72902548	1.00[EUR][1000 genomes]
rs73224614	1.00[EUR][1000 genomes]
rs73226544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73226553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73226559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs839914	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455852	chr2:21125742-21143329	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv581169	chr2:21125742-21143329	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21133400-21149400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:21135200-21139200	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:21135200-21139400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:21135600-21139400	Weak transcription	Ovary	ovary
5	chr2:21136400-21139400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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