Variant report

Variant	rs61104737
Chromosome Location	chr4:143455438-143455439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143451374..143452924-chr4:143454697..143456261,2	MCF-7	breast:
2	chr4:143390775..143397216-chr4:143452311..143461627,17	MCF-7	breast:
3	chr4:143454704..143456916-chr4:143459367..143461134,2	K562	blood:
4	chr4:143432161..143434668-chr4:143454925..143456456,2	MCF-7	breast:
5	chr4:143393069..143398763-chr4:143454567..143462510,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10519649	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100748	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100749	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11930912	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12504375	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504378	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504770	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1425518	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1425519	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1476122	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16998558	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17016344	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17016354	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17717651	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2059510	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059511	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059513	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217016	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35854467	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4246729	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4524461	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4975306	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4975313	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4975316	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975317	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4975318	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58899027	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60329859	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6537109	0.83[EUR][1000 genomes]
rs6537110	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6816875	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7671198	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143438800-143462800	Weak transcription	Aorta	Aorta
2	chr4:143444400-143456400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:143444800-143468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:143452800-143458800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:143453000-143464000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:143453600-143457000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143453800-143455600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:143453800-143458000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:143453800-143459200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:143454600-143459200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:143455200-143456200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:143455200-143456200	Weak transcription	NHDF-Ad	bronchial
13	chr4:143455400-143457000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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