Variant report

Variant	rs6110905
Chromosome Location	chr20:16087405-16087406
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1535597	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17726942	0.86[EUR][1000 genomes]
rs1885943	0.85[EUR][1000 genomes]
rs4142099	0.81[EUR][1000 genomes]
rs6043753	0.83[EUR][1000 genomes]
rs6075014	0.85[EUR][1000 genomes]
rs6075017	0.81[EUR][1000 genomes]
rs6075018	0.81[EUR][1000 genomes]
rs6075019	0.81[EUR][1000 genomes]
rs6080128	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6080131	0.83[EUR][1000 genomes]
rs6080134	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1061301	chr20:16007489-16097070	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv520909	chr20:16078767-16087405	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16081800-16087600	Weak transcription	Right Atrium	heart
2	chr20:16084600-16087600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:16084600-16088200	Weak transcription	Colon Smooth Muscle	Colon
4	chr20:16085200-16089600	Weak transcription	Primary B cells from cord blood	blood
5	chr20:16085800-16089400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr20:16086800-16088800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr20:16087000-16088200	Enhancers	Aorta	Aorta
8	chr20:16087000-16088400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr20:16087000-16088800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr20:16087000-16089000	Enhancers	Spleen	Spleen
11	chr20:16087400-16088200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr20:16087400-16088800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr20:16087400-16089000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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