Variant report

Variant	rs61143917
Chromosome Location	chr6:128796721-128796722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128796277..128798062-chr6:128801450..128803253,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10155795	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12332836	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12717181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13196790	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13201242	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13216847	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1341597	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1341599	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1891150	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28531950	0.82[EUR][1000 genomes]
rs28550449	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34337200	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35242805	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35395689	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35419289	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36120502	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58050191	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71568904	1.00[EUR][1000 genomes]
rs71568905	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71568906	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7760626	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7775722	0.82[EUR][1000 genomes]
rs9491950	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9491951	0.82[EUR][1000 genomes]
rs9491964	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9491970	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9491971	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9491972	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128787600-128799200	Weak transcription	HepG2	liver
2	chr6:128788000-128799000	Weak transcription	Liver	Liver
3	chr6:128791200-128800000	Weak transcription	Aorta	Aorta
4	chr6:128793000-128799400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:128793400-128799000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:128793400-128799400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:128793400-128803800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:128793600-128799000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:128794400-128796800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:128794400-128798200	Weak transcription	Brain Angular Gyrus	brain
11	chr6:128794400-128799200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:128794800-128796800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:128794800-128797000	Enhancers	Brain Hippocampus Middle	brain
14	chr6:128794800-128797200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:128794800-128797400	Enhancers	HMEC	breast
16	chr6:128795000-128796800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:128795000-128797400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:128795200-128796800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:128795200-128797400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:128795200-128797800	Enhancers	NHEK	skin
21	chr6:128795400-128797600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:128795400-128799000	Weak transcription	Right Ventricle	heart
23	chr6:128795400-128799200	Enhancers	Brain Substantia Nigra	brain
24	chr6:128795400-128811600	Weak transcription	HSMMtube	muscle
25	chr6:128795600-128797400	Enhancers	Fetal Heart	heart
26	chr6:128795600-128799200	Enhancers	NHDF-Ad	bronchial
27	chr6:128795600-128801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:128795800-128797400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:128795800-128797400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:128795800-128797400	Enhancers	NHLF	lung
31	chr6:128795800-128799400	Weak transcription	A549	lung
32	chr6:128796000-128796800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:128796000-128796800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:128796000-128797400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:128796000-128799000	Weak transcription	Brain Anterior Caudate	brain
36	chr6:128796000-128799400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:128796000-128803800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr6:128796000-128811400	Weak transcription	HSMM	muscle
39	chr6:128796200-128797000	Enhancers	Psoas Muscle	Psoas
40	chr6:128796200-128797200	Weak transcription	NH-A	brain
41	chr6:128796200-128799200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:128796200-128801000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:128796400-128797000	Enhancers	Brain Cingulate Gyrus	brain
44	chr6:128796400-128797000	Enhancers	Stomach Mucosa	stomach
45	chr6:128796400-128799200	Weak transcription	Primary T cells from cord blood	blood
46	chr6:128796400-128799400	Weak transcription	Gastric	stomach
47	chr6:128796400-128799400	Weak transcription	Pancreas	Pancrea
48	chr6:128796400-128799400	Weak transcription	Small Intestine	intestine
49	chr6:128796400-128799400	Weak transcription	Osteobl	bone
50	chr6:128796600-128796800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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