Variant report

Variant	rs6114474
Chromosome Location	chr20:24075217-24075218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34097439	0.84[ASN][1000 genomes]
rs6036634	0.80[ASN][1000 genomes]
rs6036639	0.97[ASN][1000 genomes]
rs6036641	0.96[ASN][1000 genomes]
rs6036642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036643	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036647	0.92[ASN][1000 genomes]
rs6049376	0.80[ASN][1000 genomes]
rs6049384	0.93[ASN][1000 genomes]
rs6049385	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049387	0.97[ASN][1000 genomes]
rs6049388	0.97[ASN][1000 genomes]
rs6049391	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6049395	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24070200-24076000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:24070800-24075800	Weak transcription	Fetal Kidney	kidney
3	chr20:24075000-24078400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:24075000-24081000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr20:24075200-24075400	Enhancers	Pancreas	Pancrea
6	chr20:24075200-24075800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr20:24075200-24076200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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