Variant report

Variant	rs6114501
Chromosome Location	chr20:24129920-24129921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs6036708	1.00[AMR][1000 genomes]
rs6036716	1.00[AMR][1000 genomes]
rs6036724	1.00[AMR][1000 genomes]
rs6049424	0.94[AFR][1000 genomes]
rs6049425	0.94[AFR][1000 genomes]
rs6049426	0.97[AFR][1000 genomes]
rs6049427	0.97[AFR][1000 genomes]
rs6049430	0.97[AFR][1000 genomes]
rs6049436	0.97[AFR][1000 genomes]
rs6049437	0.97[AFR][1000 genomes]
rs6049440	0.94[AFR][1000 genomes]
rs6049441	0.97[AFR][1000 genomes]
rs6049442	0.94[AFR][1000 genomes]
rs6049444	0.94[AFR][1000 genomes]
rs6049447	0.94[AFR][1000 genomes]
rs6049551	1.00[AMR][1000 genomes]
rs6049552	1.00[AMR][1000 genomes]
rs6106809	1.00[AMR][1000 genomes]
rs6114496	0.97[AFR][1000 genomes]
rs6114502	0.84[AFR][1000 genomes]
rs6114583	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2755330	chr20:24114903-24130700	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24123400-24130800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:24127200-24130000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:24127200-24130200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:24127400-24130600	Weak transcription	Pancreas	Pancrea
5	chr20:24128000-24131200	ZNF genes & repeats	Dnd41	blood
6	chr20:24128400-24130600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr20:24128600-24130200	Weak transcription	Liver	Liver
8	chr20:24128600-24131000	Enhancers	Placenta	Placenta
9	chr20:24129600-24130400	Enhancers	NHEK	skin
10	chr20:24129600-24130600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr20:24129800-24130000	Enhancers	HMEC	breast
12	chr20:24129800-24130200	Weak transcription	Esophagus	oesophagus
13	chr20:24129800-24130600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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