Variant report

Variant	rs6114592
Chromosome Location	chr20:24263767-24263768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24256740..24259048-chr20:24262534..24264205,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs57557589	0.86[EUR][1000 genomes]
rs59723501	1.00[EUR][1000 genomes]
rs6049565	0.88[EUR][1000 genomes]
rs60640318	1.00[EUR][1000 genomes]
rs6106819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106820	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106821	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106822	0.83[EUR][1000 genomes]
rs6106823	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106824	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106825	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106833	1.00[EUR][1000 genomes]
rs6106834	1.00[EUR][1000 genomes]
rs6106835	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106836	1.00[EUR][1000 genomes]
rs6106837	1.00[EUR][1000 genomes]
rs6106838	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106839	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106840	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106841	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106842	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106843	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106844	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106845	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106846	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106848	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106849	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106850	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114593	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114594	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114595	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114596	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114597	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114598	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114599	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114601	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114602	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114604	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114606	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114612	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114613	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114616	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114617	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114618	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114619	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114627	1.00[EUR][1000 genomes]
rs6114629	1.00[EUR][1000 genomes]
rs6114630	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114631	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114632	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114633	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114634	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114635	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114636	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114637	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114638	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114639	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114640	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114641	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114642	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114643	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114645	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114646	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114647	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114648	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114649	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114650	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114651	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114652	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61212262	1.00[EUR][1000 genomes]
rs73330483	1.00[EUR][1000 genomes]
rs73330497	1.00[EUR][1000 genomes]
rs73902774	1.00[EUR][1000 genomes]
rs73902777	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902801	1.00[EUR][1000 genomes]
rs926995	1.00[EUR][1000 genomes]
rs926996	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24261600-24264600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24262800-24264200	Enhancers	Fetal Brain Female	brain
3	chr20:24263400-24265000	Enhancers	Fetal Brain Male	brain
4	chr20:24263600-24263800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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