Variant report

Variant	rs6114706
Chromosome Location	chr20:24396739-24396740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10154028	0.83[AFR][1000 genomes]
rs10485832	0.83[AFR][1000 genomes]
rs11905416	1.00[EUR][1000 genomes]
rs11907190	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907337	1.00[EUR][1000 genomes]
rs11907441	1.00[EUR][1000 genomes]
rs11908251	1.00[EUR][1000 genomes]
rs11908668	0.83[AFR][1000 genomes]
rs11908670	0.83[AFR][1000 genomes]
rs13433381	0.81[AFR][1000 genomes]
rs1475408	1.00[EUR][1000 genomes]
rs1603419	1.00[EUR][1000 genomes]
rs2386950	0.83[AFR][1000 genomes]
rs4378873	0.81[AFR][1000 genomes]
rs4536719	0.83[AFR][1000 genomes]
rs55911906	0.83[AFR][1000 genomes]
rs56210745	0.83[AFR][1000 genomes]
rs56891012	0.83[AFR][1000 genomes]
rs57391168	0.83[AFR][1000 genomes]
rs57528196	0.83[AFR][1000 genomes]
rs57839314	1.00[EUR][1000 genomes]
rs59144661	0.83[AFR][1000 genomes]
rs59196447	0.83[AFR][1000 genomes]
rs59479539	0.83[AFR][1000 genomes]
rs60092562	0.83[AFR][1000 genomes]
rs6036734	1.00[EUR][1000 genomes]
rs6036735	1.00[EUR][1000 genomes]
rs6036736	1.00[EUR][1000 genomes]
rs6036738	1.00[EUR][1000 genomes]
rs6036739	1.00[EUR][1000 genomes]
rs6036740	1.00[EUR][1000 genomes]
rs60401696	1.00[EUR][1000 genomes]
rs6049582	1.00[EUR][1000 genomes]
rs6049583	1.00[EUR][1000 genomes]
rs6049584	1.00[EUR][1000 genomes]
rs6049586	1.00[EUR][1000 genomes]
rs6049587	1.00[EUR][1000 genomes]
rs6049588	1.00[EUR][1000 genomes]
rs6049591	1.00[EUR][1000 genomes]
rs6049592	1.00[EUR][1000 genomes]
rs6049596	1.00[EUR][1000 genomes]
rs6049597	1.00[EUR][1000 genomes]
rs6049599	1.00[EUR][1000 genomes]
rs6049600	1.00[EUR][1000 genomes]
rs6049602	1.00[EUR][1000 genomes]
rs6049605	1.00[EUR][1000 genomes]
rs6106865	0.81[AFR][1000 genomes]
rs6106870	0.83[AFR][1000 genomes]
rs6106871	0.83[AFR][1000 genomes]
rs6106875	0.83[AFR][1000 genomes]
rs6106876	0.82[AFR][1000 genomes]
rs6114694	0.85[AFR][1000 genomes]
rs6114698	0.83[AFR][1000 genomes]
rs6114701	0.83[AFR][1000 genomes]
rs6114702	0.83[AFR][1000 genomes]
rs6114704	0.81[AFR][1000 genomes]
rs6114705	0.83[AFR][1000 genomes]
rs6515493	0.83[AFR][1000 genomes]
rs67248734	0.83[AFR][1000 genomes]
rs67693005	0.82[AFR][1000 genomes]
rs7265757	0.83[AFR][1000 genomes]
rs7265908	0.83[AFR][1000 genomes]
rs7272592	0.81[AFR][1000 genomes]
rs7273213	1.00[EUR][1000 genomes]
rs73339982	1.00[EUR][1000 genomes]
rs73341652	1.00[EUR][1000 genomes]
rs7346006	1.00[EUR][1000 genomes]
rs8114637	0.83[AFR][1000 genomes]
rs8114747	0.83[AFR][1000 genomes]
rs8120542	0.83[AFR][1000 genomes]
rs9974024	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24393000-24400000	Weak transcription	Aorta	Aorta
2	chr20:24395600-24397200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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