Variant report

Variant	rs6114709
Chromosome Location	chr20:24404474-24404475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10154028	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10485832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11906542	0.92[AFR][1000 genomes]
rs11907112	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11907557	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11908668	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11908670	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13433130	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433219	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433381	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986554	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17823686	0.85[EUR][1000 genomes]
rs2206647	0.92[AFR][1000 genomes]
rs2206648	0.92[AFR][1000 genomes]
rs2386950	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35184720	1.00[AMR][1000 genomes]
rs4378873	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4536719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55642683	0.85[EUR][1000 genomes]
rs55911906	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56210745	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56891012	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57391168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57442266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57528196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59144661	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59196447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59479539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60092562	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6049703	0.85[EUR][1000 genomes]
rs6106865	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106870	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6106871	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6106875	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114688	0.92[AFR][1000 genomes]
rs6114691	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6114694	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114695	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114698	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114701	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114702	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114710	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114728	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114731	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6515493	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66502369	0.92[AFR][1000 genomes]
rs67248734	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67693005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68032297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7265757	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7265908	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7272592	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7360577	0.92[AFR][1000 genomes]
rs7362821	0.92[AFR][1000 genomes]
rs8114637	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8114747	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8120542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9974024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24401200-24412400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:24403200-24405200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr20:24403400-24411400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:24403600-24404800	Enhancers	Fetal Brain Male	brain
5	chr20:24404000-24404600	Enhancers	Fetal Brain Female	brain
6	chr20:24404000-24404800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr20:24404000-24405200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:24404000-24405200	Enhancers	Brain Germinal Matrix	brain
9	chr20:24404000-24406000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr20:24404200-24404800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr20:24404200-24404800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr20:24404200-24404800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr20:24404200-24404800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr20:24404200-24405200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr20:24404200-24406800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr20:24404200-24407200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr20:24404400-24404800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr20:24404400-24405200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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