Variant report

Variant	rs6114731
Chromosome Location	chr20:24427180-24427181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10154028	0.86[EUR][1000 genomes]
rs10485832	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11908668	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11908670	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13433130	0.82[AMR][1000 genomes]
rs13433219	0.82[AMR][1000 genomes]
rs13433381	0.82[AMR][1000 genomes]
rs17823686	0.85[EUR][1000 genomes]
rs2386950	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35184720	0.82[AMR][1000 genomes]
rs4378873	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4536719	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55642683	0.85[EUR][1000 genomes]
rs55911906	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56210745	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56891012	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57391168	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57442266	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57528196	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59144661	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59196447	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59479539	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60092562	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6036798	0.83[AFR][1000 genomes]
rs6036800	0.83[AFR][1000 genomes]
rs6036801	0.83[AFR][1000 genomes]
rs6036802	0.84[AFR][1000 genomes]
rs6049696	0.83[AFR][1000 genomes]
rs6049697	0.83[AFR][1000 genomes]
rs6049698	0.82[AFR][1000 genomes]
rs6049699	0.83[AFR][1000 genomes]
rs6049700	0.84[AFR][1000 genomes]
rs6049703	0.85[EUR][1000 genomes]
rs6106865	0.82[AMR][1000 genomes]
rs6106870	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6106871	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6106875	0.82[AMR][1000 genomes]
rs6106876	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114694	0.82[AMR][1000 genomes]
rs6114695	0.82[AMR][1000 genomes]
rs6114698	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114701	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114702	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114704	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114705	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6114709	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114710	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114728	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6515493	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67248734	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67693005	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68032297	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7265757	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7265908	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7272592	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8114637	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8114747	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8120542	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9974024	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv458954	chr20:24410195-24431225	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585733	chr20:24410195-24431225	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24423000-24427400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr20:24423400-24427600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24425400-24432200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:24425800-24429800	Enhancers	Fetal Thymus	thymus
5	chr20:24426200-24427200	Enhancers	Brain Angular Gyrus	brain
6	chr20:24426200-24427200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr20:24426400-24427400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr20:24426400-24427400	Enhancers	Brain Anterior Caudate	brain
9	chr20:24426400-24427400	Enhancers	Brain Hippocampus Middle	brain
10	chr20:24426400-24427600	Enhancers	Brain Cingulate Gyrus	brain
11	chr20:24426400-24427800	Weak transcription	Thymus	Thymus
12	chr20:24426600-24427200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr20:24426600-24427800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr20:24426600-24435800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr20:24426800-24427200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr20:24426800-24427200	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr20:24426800-24427200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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