Variant report

Variant	rs6114756
Chromosome Location	chr20:24505990-24505991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10222011	1.00[AMR][1000 genomes]
rs57330425	1.00[AMR][1000 genomes]
rs6106896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106897	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114761	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114762	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114824	1.00[AMR][1000 genomes]
rs73341698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902581	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24491400-24508600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:24503400-24511000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr20:24503800-24511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:24504000-24525800	Weak transcription	Aorta	Aorta
5	chr20:24504800-24508400	Weak transcription	Fetal Brain Male	brain
6	chr20:24505000-24509200	Weak transcription	Brain Hippocampus Middle	brain
7	chr20:24505000-24509800	Weak transcription	Brain Anterior Caudate	brain
8	chr20:24505000-24509800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr20:24505000-24510800	Weak transcription	Brain Germinal Matrix	brain
10	chr20:24505600-24509200	Weak transcription	Brain Substantia Nigra	brain
11	chr20:24505600-24509400	Weak transcription	Brain Angular Gyrus	brain
12	chr20:24505600-24509600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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