Variant report

Variant	rs6115205
Chromosome Location	chr20:25512230-25512231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25499922..25502486-chr20:25510143..25513350,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6115158	0.81[AFR][1000 genomes]
rs6115196	0.91[AFR][1000 genomes]
rs6115209	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067379	chr20:25355484-25593240	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv912828	chr20:25433015-25595175	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1062452	chr20:25438025-25590278	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1066066	chr20:25439367-25588016	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv544224	chr20:25439367-25588016	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv912829	chr20:25444242-25595175	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv912830	chr20:25449945-25595175	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv912831	chr20:25449945-25595868	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv994976	chr20:25466406-25593286	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv534623	chr20:25466406-25593296	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv1062765	chr20:25466482-25556751	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv544225	chr20:25466482-25556751	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	esv2762069	chr20:25506582-25619528	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
17	nsv979406	chr20:25509600-25513942	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25493200-25512800	Weak transcription	Colon Smooth Muscle	Colon
2	chr20:25493600-25513000	Weak transcription	Left Ventricle	heart
3	chr20:25495800-25519400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr20:25496000-25512400	Weak transcription	Brain Angular Gyrus	brain
5	chr20:25496000-25513200	Weak transcription	HUVEC	blood vessel
6	chr20:25497400-25512400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr20:25497400-25512400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr20:25497400-25514800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr20:25497600-25512600	Weak transcription	Fetal Heart	heart
10	chr20:25498200-25512600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr20:25498200-25512600	Weak transcription	Brain Anterior Caudate	brain
12	chr20:25498200-25512800	Weak transcription	Adipose Nuclei	Adipose
13	chr20:25498200-25513000	Weak transcription	Fetal Thymus	thymus
14	chr20:25498200-25514600	Weak transcription	Pancreas	Pancrea
15	chr20:25498200-25519000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr20:25498200-25519400	Weak transcription	Gastric	stomach
17	chr20:25498200-25532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr20:25498400-25519200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr20:25498600-25512800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr20:25502600-25519800	Weak transcription	Stomach Mucosa	stomach
21	chr20:25502800-25513200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr20:25503400-25512400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr20:25504800-25512800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr20:25505000-25512800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr20:25505200-25512800	Weak transcription	Esophagus	oesophagus
26	chr20:25505200-25513800	Weak transcription	Fetal Kidney	kidney
27	chr20:25505400-25513000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr20:25505400-25514600	Weak transcription	Lung	lung
29	chr20:25505400-25521000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr20:25507000-25512800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr20:25507200-25512400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr20:25507200-25512600	Weak transcription	Fetal Muscle Leg	muscle
33	chr20:25507200-25513400	Weak transcription	Fetal Lung	lung
34	chr20:25507400-25512400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr20:25507400-25512400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr20:25507400-25512600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr20:25507400-25512600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr20:25507400-25512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr20:25507400-25518400	Weak transcription	A549	lung
40	chr20:25507600-25512400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr20:25507600-25512400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr20:25507600-25512400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr20:25507600-25512400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr20:25507600-25512600	Weak transcription	Ovary	ovary
45	chr20:25507600-25512800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr20:25507600-25512800	Weak transcription	HMEC	breast
47	chr20:25507600-25512800	Weak transcription	Osteobl	bone
48	chr20:25507600-25513000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr20:25507600-25513400	Weak transcription	Liver	Liver
50	chr20:25507600-25513600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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