Variant report

Variant	rs61152555
Chromosome Location	chr13:96615378-96615379
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13378684	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28625167	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28895285	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35405829	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3782991	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3825423	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4406928	0.90[AFR][1000 genomes]
rs58509921	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61422359	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7318577	0.87[EUR][1000 genomes]
rs7327257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7330135	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7332461	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7988464	0.87[AFR][1000 genomes]
rs7990333	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7990743	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9584330	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9584331	0.97[AFR][1000 genomes]
rs9584332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9584335	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9590335	0.85[AFR][1000 genomes]
rs9590338	0.90[AFR][1000 genomes]
rs9590340	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9590341	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590351	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9590353	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9590354	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9590356	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9590357	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900935	chr13:96497070-96631221	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96577000-96623200	Weak transcription	NHLF	lung
2	chr13:96589000-96615600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:96591600-96622000	Weak transcription	Hela-S3	cervix
4	chr13:96592200-96616200	Weak transcription	Brain Angular Gyrus	brain
5	chr13:96599000-96623600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr13:96599400-96620600	Weak transcription	HSMM	muscle
7	chr13:96600200-96620800	Weak transcription	Osteobl	bone
8	chr13:96604000-96620600	Weak transcription	Left Ventricle	heart
9	chr13:96609400-96623600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr13:96609800-96636200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr13:96611800-96620600	Weak transcription	Ovary	ovary
12	chr13:96612000-96620600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:96612200-96620600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:96612200-96620600	Weak transcription	Aorta	Aorta
15	chr13:96612200-96620800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:96612200-96622800	Weak transcription	Spleen	Spleen
17	chr13:96612200-96623600	Weak transcription	Placenta	Placenta
18	chr13:96612200-96655000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:96612200-96668600	Weak transcription	Pancreas	Pancrea
20	chr13:96612400-96621000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr13:96612400-96623200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:96613000-96616400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:96613200-96694200	Weak transcription	A549	lung
24	chr13:96613400-96615600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:96613400-96620600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:96613400-96623200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr13:96613400-96634000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:96613400-96641600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:96613400-96643000	Weak transcription	Right Ventricle	heart
30	chr13:96613600-96615800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr13:96613600-96650000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr13:96613600-96663600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr13:96614000-96652400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:96614200-96621400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr13:96614400-96618400	Weak transcription	Colon Smooth Muscle	Colon
36	chr13:96614800-96615800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
37	chr13:96615000-96615400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr13:96615000-96620800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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