Variant report

Variant	rs6115453
Chromosome Location	chr20:25965558-25965559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10211715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6107119	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6115320	1.00[AMR][1000 genomes]
rs6115322	1.00[AMR][1000 genomes]
rs6115396	1.00[AMR][1000 genomes]
rs6115401	1.00[AMR][1000 genomes]
rs6115451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758517	chr20:25701992-26319569	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
2	esv2758790	chr20:25701992-26319569	Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv470545	chr20:25715507-26309255	Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv1059041	chr20:25832105-26007269	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1060065	chr20:25832105-26305567	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
6	nsv962569	chr20:25876021-26152500	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv585761	chr20:25892571-26299677	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
8	esv3518424	chr20:25911038-26051227	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3518425	chr20:25911125-26051144	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1060508	chr20:25918612-26305567	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
11	nsv1057970	chr20:25937126-26305567	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
12	nsv1059447	chr20:25941928-26305567	Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
13	nsv9796	chr20:25944188-25979608	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
14	nsv1067411	chr20:25955110-26305567	Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
15	nsv1065198	chr20:25959162-26305567	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25965000-25965600	Enhancers	Fetal Stomach	stomach
2	chr20:25965000-25968600	Active TSS	Brain Germinal Matrix	brain
3	chr20:25965200-25965800	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr20:25965200-25966600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr20:25965200-25966600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:25965200-25966800	Active TSS	Fetal Brain Female	brain
7	chr20:25965400-25965600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:25965400-25965600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr20:25965400-25965600	Active TSS	Fetal Muscle Trunk	muscle
10	chr20:25965400-25965600	Bivalent Enhancer	Placenta	Placenta
11	chr20:25965400-25965800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr20:25965400-25965800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr20:25965400-25965800	Active TSS	Muscle Satellite Cultured Cells	--
14	chr20:25965400-25966000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr20:25965400-25966000	Active TSS	Left Ventricle	heart
16	chr20:25965400-25966000	Active TSS	Ovary	ovary
17	chr20:25965400-25966000	Active TSS	Psoas Muscle	Psoas
18	chr20:25965400-25966000	Active TSS	HSMM	muscle
19	chr20:25965400-25966000	Active TSS	NH-A	brain
20	chr20:25965400-25966000	Active TSS	Osteobl	bone
21	chr20:25965400-25966200	Active TSS	Primary T cells fromperipheralblood	blood
22	chr20:25965400-25966200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr20:25965400-25966200	Active TSS	Colon Smooth Muscle	Colon
24	chr20:25965400-25966200	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr20:25965400-25966200	Active TSS	Right Ventricle	heart
26	chr20:25965400-25966200	Active TSS	Stomach Smooth Muscle	stomach
27	chr20:25965400-25966200	Active TSS	Thymus	Thymus
28	chr20:25965400-25966400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr20:25965400-25966400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr20:25965400-25966400	Active TSS	Brain Anterior Caudate	brain
31	chr20:25965400-25966400	Active TSS	Brain Hippocampus Middle	brain
32	chr20:25965400-25966400	Active TSS	Brain Substantia Nigra	brain
33	chr20:25965400-25966600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr20:25965400-25966800	Active TSS	Brain Cingulate Gyrus	brain

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