Variant report

Variant	rs61156634
Chromosome Location	chr3:81885418-81885419
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81885124..81886646-chr3:81889084..81891267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242009	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10433513	0.89[EUR][1000 genomes]
rs10460925	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11127743	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11127744	0.89[EUR][1000 genomes]
rs11127745	0.84[EUR][1000 genomes]
rs12233505	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12630587	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12631503	0.89[EUR][1000 genomes]
rs1404295	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1524556	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17019297	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17019364	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17019369	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17019416	0.84[EUR][1000 genomes]
rs17019418	0.89[EUR][1000 genomes]
rs17019431	0.89[EUR][1000 genomes]
rs3772885	0.82[ASN][1000 genomes]
rs55988714	0.89[EUR][1000 genomes]
rs56019819	0.84[EUR][1000 genomes]
rs56028558	0.84[EUR][1000 genomes]
rs56120615	0.84[EUR][1000 genomes]
rs60428278	0.84[EUR][1000 genomes]
rs61540531	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61572709	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61617076	0.89[EUR][1000 genomes]
rs6765293	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6778413	0.81[ASN][1000 genomes]
rs6784904	0.89[EUR][1000 genomes]
rs6791857	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73134760	0.89[EUR][1000 genomes]
rs73134764	0.84[EUR][1000 genomes]
rs73134800	0.84[EUR][1000 genomes]
rs73134802	0.84[EUR][1000 genomes]
rs73136709	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73138733	0.89[EUR][1000 genomes]
rs73138765	0.89[EUR][1000 genomes]
rs73138781	0.84[EUR][1000 genomes]
rs73138782	0.89[EUR][1000 genomes]
rs73138783	0.84[EUR][1000 genomes]
rs7611917	0.81[ASN][1000 genomes]
rs7611964	0.84[EUR][1000 genomes]
rs7612181	0.84[EUR][1000 genomes]
rs7618777	0.84[EUR][1000 genomes]
rs7619049	0.84[EUR][1000 genomes]
rs7635332	0.81[ASN][1000 genomes]
rs7644425	0.80[ASN][1000 genomes]
rs9812141	0.81[ASN][1000 genomes]
rs9812505	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81883400-81886600	Weak transcription	Dnd41	blood
2	chr3:81885200-81889000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:81885400-81886600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:81885400-81889600	Enhancers	HUES64 Cell Line	embryonic stem cell

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